Apply persistent genomic truth to a BED cohort

Apply persistent genomic truth to a BED cohort

Usage

gsim_genetic_values(genotypes, state, ids = NULL)

Arguments

genotypes

BED prefix, BED manifest, or gsim_cohort.

state

A persistent gsim_trait_state.

ids

Optional unique sample IDs, in desired result order.

Value

Animal-by-trait genomic values accumulated natively from packed BED. No phenotype generation, realized-variance normalization, cohort recentering, qgg dependency, or full decoded genotype matrix is involved.