Package index • gsim

All functions

gsim(): Simulate genomic data from an in-memory matrix or a qgg Glist
gsim_gene_sets(): Generate gene sets conditional on known causal SNPs
gsim_genetic_values(): Apply persistent genomic truth to a BED cohort
gsim_import_vcf(): Import a phased biallelic VCF reference panel
gsim_mate(): Mate selected sires and dams to construct a new cohort
gsim_pedigree(): Simulate a deterministic multigenerational pedigree workload
gsim_pedigree_from_table(): Construct a validated pedigree from supplied parentage
gsim_pedigree_records(): Simulate observation records from a gsim pedigree
gsim_pool(): Form paired pooled allele frequencies and phenotype summaries
gsim_pool_covariance(): Query pooled phenotype measurement-noise covariance
gsim_records(): Generate single, multiple or longitudinal records from genomic values
gsim_reference(): Open a packed HAP/BIM/FAM reference panel
gsim_sample(): Sample individual records and retain explicitly selected animals
gsim_select(): Select animals by random sampling or supplied scores
gsim_simulate_cohort(): Generate one cohort from already simulated phased parents
gsim_simulate_founders(): Simulate a reusable phased synthetic base population
gsim_simulate_pedigree(): Simulate Mendelian descendants from a phased base population
gsim_trait_state(): Create persistent marker-effect and reporting-base state
print(<gsim>): Print a gsim object