Function reference

All functions

acc()

Compute prediction accuracy for a quantitative or binary trait

adjStat()

Adjustment of marker summary statistics using clumping and thresholding

gbayes()

Bayesian linear regression models

getG()

Get elements from genotype matrix stored in PLINK bedfiles

gfilter()

Filter genetic marker data based on different quality measures

glma()

Single marker association analysis using linear models or linear mixed models

gmap()

Finemapping using Bayesian Linear Regression Models

gprep()

Prepare genotype data for all statistical analyses

greml()

Genomic rescticted maximum likelihood (GREML) analysis

grm()

Computing the genomic relationship matrix (GRM)

gscore()

Genomic scoring based on single marker summary statistics

gsea()

Gene set enrichment analysis

gsim()

Genomic simulation

gsolve()

Solve linear mixed model equations

ldsc()

LD score regression

mtadj()

Adjustment of marker effects using correlated trait information